After re-reading your question I noticed you clearly said "A character" described as the chosen one and not per-se the main character.
that changes my view on the question, because I find "a main character" written as the chosen one is a terrible idea. because it changes the way you look at your group of characters. In some way it will always pull your main protagonist to the foreground and demand attention to him/her making all your other characters play second fiddle, but if it's just "A character" within the group you give yourself more freedom.
Also, what kind of "chosen one" is it? If you stay away from the "I-have-the-OP-special-power"- and "I-am-the-sacrifice-to save-the-world" Chosen one, then you at least strayed off from the most generic 2 variants.
and even then it's a trope that is hard to make good subversions on.
