I don't think everyone agrees that these are hated scenes. There's a bunch of people on these forums who are tired of certain scenes, but there are others who have no problem with cliche scenes, or even LIKE them!
I don't ignore my readers' thoughts entirely -- if it seems like people don't understand something that I thought they would understand, I'll think about ways to make it more obvious; and if they seem to be misunderstanding a character, I'll think about what I can show that will get across what I wanted more clearly (or play off of their misunderstanding).
But if the readers would've preferred the story to go a different way or are pushing me to tell a different story, well... I mean, this is my story. I have characters I want to introduce people to, and things I want to say. I could change those things, but what would be the point? I'm not telling my story in order to gain readers; I'm telling a story because I have a story I want to tell, and I'm hoping to find people who will listen to that story. Changing the story wouldn't get me anything.
I don't think that means I CAN'T CHANGE A SCENE WITHOUT SACRIFICING MY ARTISTIC INTEGRITY, though. Like, if I plan to have a Protagonist is Late For Class scene, and someone says "I hate the Late for Class scene, it's so cliche" before I get to that scene, then yeah, I'm going to think really hard about whether that's the best way to get across the things I wanted to get across. Why is that scene there? Is it just me lazily using an existing trope, or is it there for a good reason? I might decide it's good for my story and keep it, or I might decide that it's hurting the story I want to tell, and change it. The decision isn't "will this turn away readers" but "is this good for the story I want to tell."