Yess, the only things you would have missed were references like the Mojo jojo one since the plot was like more "original" than anything and for like... 6 chapters there weren't gonna be anything people that didn't watch the cartoon would miss.
But yeaaah tbh, I can do so much more with it if it's not a fancomic so I'm really glad you're okay with this x'D
I even wondered if to delete my comic or to leave it hanging though I think it'll be okay even if I let it exist haha, I think the most annoying thing will be coming up with another title now XD but yeaaah I feel free and not bound by chains anymore >:]
I've already started planing more stuff that is waaay different to what I've already shown. That confusing chapter 1 isn't going to be in the this next version though BD but some bits of the prologue will remain.
Theres even a situation about someone wanting to help and making things worse
I remember you said something like that was appealing to you and it just happens that what I came up with for the beginning has a theme like that somewhere BD Not sure if it gets passing marks by your standard but I won't say just to keep it a surprise haha. You'll probably recognize the scene, if you do and think it has a "pass" be sure to tell me then 
But indeed, I was even limiting myself in not including themes, characters and stuff just cause it was giving away my characters and like filling the story with fancharacters xD so yeaaah, it's way better to just do everything original 
Soo I'm happy it'll help dispel any fears and the like C: